merged with tom

src/AbstractAnalysis.cpp

@@ -34,6 +34,9 @@
 #include "RefractiveIndex.h"
 #include "ofxFileHelper.h"
 
+
+vector<ofMesh>  AbstractAnalysis::meshes;
+
 // this is the main threaded loop for a given analysis
 void AbstractAnalysis::do_synthesize() {
     _state = STATE_ACQUIRING;
@@ -41,6 +44,7 @@ void AbstractAnalysis::do_synthesize() {
     _state = STATE_SYNTHESISING;
     synthesise();
     _state = STATE_DISPLAY_RESULTS;
+    display_results();
     ofNotifyEvent(_synthesize_cb, _name);
 }
 
@@ -143,7 +147,70 @@ ofPixels AbstractAnalysis::calculateListOfZValues(ofImage image1, ofImage image2
     
 }
 
-void AbstractAnalysis:: setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh){
+ofPixels AbstractAnalysis::calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison, int colourValue){
+    //zScale is the mapping factor from pixel difference to shift on the zPlane
+    int zScale=200;
+    
+    ofPixels imagePixels1 = image1.getPixelsRef();
+    ofPixels imagePixels2 = image2.getPixelsRef();
+    
+    ofPixels difference;
+    //this unsigned char should be unnecessary - I would have thought - can't you just address the pixel locations in ofPixels directly? 
+    unsigned char * thesePixels = new unsigned char[ imagePixels1.getWidth()*imagePixels1.getHeight()*3];
+    
+    //where are we in the image pixel array
+    int x=0;
+    int y=0;
+    
+    //for each pixel...
+    for(int i=0;i<imagePixels1.size();i+=3){
+        
+        //get the colour of each image at this x y location - we will use these colours for comparison according to the below criteria
+        ofColor colourImage1 = imagePixels1.getColor(x, y);
+        ofColor colourImage2 = imagePixels2.getColor(x, y);
+        
+        //COMPARE THIS PIXEL'S VALUES with the first image in the sequence
+        int thisDiff;
+        //compare Red
+        if (whichComparison==1) {
+            thisDiff=ofMap((colourImage1.r-colourImage2.r),-255,255,0,zScale);
+        }
+        //compare blue
+        if (whichComparison==2) {
+            thisDiff=ofMap((colourImage1.g-colourImage2.g),-255,255,0,zScale);
+        }
+        //compare green
+        if (whichComparison==3) {
+            thisDiff=ofMap((colourImage1.b-colourImage2.b),-255,255,0,zScale);
+        }
+        //compare hue
+        if (whichComparison==4) {
+            thisDiff=ofMap((colourImage1.getHue()-colourImage2.getHue()),-255,255,0,zScale);
+        }
+        //compare brightness
+        if (whichComparison==5) {
+            thisDiff=ofMap((colourImage1.getBrightness()-colourImage2.getBrightness()),-255,255,0,zScale);
+        }
+        thesePixels[i]=thisDiff;
+        thesePixels[i+1]=thisDiff;
+        thesePixels[i+2]=thisDiff;
+        
+        x++;
+        //new line
+        if(x>imagePixels1.getWidth()){
+            x=0;
+            y++;
+            
+        }
+    }
+    
+    difference.setFromPixels(thesePixels,imagePixels1.getWidth(),imagePixels1.getHeight(), 3);
+    
+    return difference;
+    
+}
+
+void AbstractAnalysis::setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh){
     int x=0;
     int y=0;
     
@@ -165,3 +232,87 @@ void AbstractAnalysis:: setMeshFromPixels(ofPixels somePixels, ofImage currentSe
     }
     
 }
+
+vector<string>AbstractAnalysis:: getListOfImageFilePaths(string location, string whichAnalysis){
+    
+    string path = ofToDataPath("")+"debug_analysis/"+location+"/"+whichAnalysis;
+    //ofxDirList dirList;
+    ofDirectory dirList;
+    int numDirs = dirList.listDir(path);
+    
+    vector<string>directoryNames;
+    
+    //get the last folder alphabetically - this should probably change to do something fancy with date to find most recent but don't want to code that until we are sure
+    string dirName=dirList.getName(numDirs-1);
+    
+    
+    const char *results=dirName.c_str();
+    
+    ofFile file=ofFile(path+"/"+dirName);
+    vector<string>fileNamesToReturn;
+    
+    
+    // get 
+    if(file.isDirectory()){
+        dirList.listDir(path+"/"+dirName);
+        //if there are no files, exit here
+        if(dirList.size()==0){
+            //if it's empty return an error warning
+            fileNamesToReturn.push_back("NO FILE HERE!");
+            cout<<"NO FILE HERE!";
+            return fileNamesToReturn;
+        }
+        for (int i=0; i<dirList.size(); i++) {
+            
+            string fname=dirList.getName(i);
+            const char *results=fname.c_str();
+            
+            //full path is what actually gets written into the vector
+            string fullPath=path+"/"+dirName+"/"+fname;
+            
+            
+            fileNamesToReturn.push_back(fullPath);
+        }
+    }
+    else{
+        cout<<"WARNING, DIRECTORY NOT FOUND";
+        fileNamesToReturn.push_back("NO FILE HERE!");
+    }
+    
+    
+    
+    
+    return fileNamesToReturn;
+}
+int AbstractAnalysis::getRecordedValueFromFileName(string str){
+    //split filename by underscore - there HAS to be a quicker way of doing things - its ONE LINE in java :(
+    char * cstr, *p;
+    vector<char *>tokens;
+    //string str ("Please split this phrase into tokens");
+    
+    //make char pointer array
+    cstr = new char [str.size()+1];
+    //copy string to char pointer array
+    strcpy (cstr, str.c_str());
+    
+    //tokenise char p array and put first results into pointer?
+    p=strtok (cstr,"_");
+    
+    while (p!=NULL)
+    {
+        p=strtok(NULL,"_");
+        //push tokenised char into vector
+        tokens.push_back(p);
+        
+    }
+    delete[] cstr; 
+    char *p1;
+    //cstr = new char [str.size()+1];
+    //strcpy (cstr, str.c_str());
+    
+    p1=strtok (tokens[tokens.size()-2],".");
+    
+    return ofToInt(p1);
+}
+
+

src/AbstractAnalysis.h

@@ -16,6 +16,12 @@
 #define STATE_DISPLAY_RESULTS   0x3333
 #define STATE_STOP              0xDEADBEEF
 
+#define COMPARE_RED 1
+#define COMPARE_BLUE 2
+#define COMPARE_GREEN 3
+#define  COMPARE_HUE 4
+#define COMPARE_BRIGHTNESS 5
+
 class AbstractAnalysis {
     
 public:
@@ -39,11 +45,28 @@ protected:
     
     // analysis + synthesize images - all the children (see - do_synthesize)
     virtual void synthesise() = 0;   
+   
+    //added tom s 19/2 function runs a call back exactly like acquire.
+    virtual void display_results() = 0;   
     
+    //returns ofPixels which contain the color differences between the two images. Is overloaded to include comparison with values written in to file names for some analyses
     virtual ofPixels calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison);
+    virtual ofPixels calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison, int colourValue);
     
+    //uses the returned pixels from make3DZmap to make a mesh of points whose Z positions are set by the brightness values in ofPixels - ofPixels is being used as a convenient container for a bunch of z coordinates
     virtual void setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh);
-        
+    //HELPER FUNCTIONS
+    
+    //this is purely for debug/viewing purposes and loads old images from middlesborough test
+    virtual vector<string> getListOfImageFilePaths(string location, string whichAnalysis);
+    
+    //splits up the filename and returns the recorded value eg brightness
+    //EG FILENAME : DIFF_NOISE_7_85.7322.jpg RETURNS : 85.7322
+    virtual int getRecordedValueFromFileName(string str);
+    
+    static vector<ofMesh>meshes;
+
+    
 public:
     string  _name;    
     
@@ -64,7 +87,7 @@ protected:
     
     //added Tom S 19/2/12
     //each mesh in the vector is a seperate 3D point cloud which is coloured with pixel data and shifted in the z plane according to the specified type of colour difference eg red value or hue
-    vector<ofMesh>meshes;
+    //make this vector were static
     //how fast to move from one mesh to the next
     float speed;
     //the index (inside the vector of meshes) of the current mesh being displayed

src/CamNoiseAnalysis.cpp

@@ -59,9 +59,68 @@ void CamNoiseAnalysis::acquire()
 
 void CamNoiseAnalysis::synthesise()
 {
-
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=true;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_hue_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE,_recorded_hue_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
 
+void CamNoiseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<CamNoiseAnalysis> display_results_callback(*this, &CamNoiseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -136,6 +195,27 @@ void CamNoiseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -159,9 +239,15 @@ void CamNoiseAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     //if(_save_cnt >= NUM_SAVE_PER_RUN)
     //    _RUN_DONE = true;
 
 }
+void CamNoiseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}

src/CamNoiseAnalysis.h

@@ -19,16 +19,18 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max,_save_cnt_max ;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
 
     
 };

src/ColorMultiAnalysis.cpp

@@ -41,15 +41,11 @@ using Poco::Timer;
 using Poco::TimerCallback;
 using Poco::Thread;
 
-#define COMPARE_RED 1
+
-#define COMPARE_BLUE 2
-#define COMPARE_GREEN 3
-#define  COMPARE_HUE 4
-#define COMPARE_BRIGHTNESS 5
 
 void ColorMultiAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 50;//150; // the right number is about 300
+    DELTA_T_SAVE = 100;//150; // the right number is about 300
     NUM_PHASE = 1;
     NUM_RUN = 1;
     NUM_SAVE_PER_RUN = 100;//;    
@@ -90,34 +86,64 @@ void ColorMultiAnalysis::acquire()
 
 void ColorMultiAnalysis::synthesise()
 {
-    cout<<"SYNTHESISING MULTI";
-    // _saved_filenames has all the file names of all the saved images
-    // _saved_filenames has all the file names of all the saved images
     //incrementer to whichMesh
     speed=0.2;
     //whichMesh is the index in the vector of meshes
     whichMesh=0;
-
+    
-    cout<<"image loaded ";
-    //there is a problem with natural vs alphabetical order when loading the files - we need to make a fix for this
-    int shift=0;
-    cout<<_saved_filenames.size()<<" image filenames ";
     int index=0;
-    //for(int i=shift;i<_saved_filenames.size()-2;i+=2){
+    float iterator=1;
-       // cout<<_saved_filenames[i]<<endl;
+    bool debug=false;
-
+    if(debug){
-        meshes.push_back(ofMesh());
+        _saved_filenames.clear();
-    image1.loadImage("/Users/tomschofield/of_preRelease_v007_osx/apps/refracitveGitRepoFeb/RefractiveIndex/src/macro.png");
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
-        /*ofImage image2;
-        image2.loadImage(_saved_filenames[i+1]);
         
-        setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BLUE), image2, &meshes[index]);            
+        //hack to limit number of meshes.
-        */
+        if(_saved_filenames.size()>100){
-    index++;
+            iterator= _saved_filenames.size() /100;
-    //}
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[0]) && image2.loadImage(_saved_filenames[i+1])){
+            cout<<"setting mesh"<<endl;
+            meshes.push_back(ofMesh());
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE), image2, &meshes[index]);            
+            index++;
+            }
+        }
 }
 
-
+void ColorMultiAnalysis::display_results(){
+   
+    Timer* display_results_timer;
+    
+    TimerCallback<ColorMultiAnalysis> display_results_callback(*this, &ColorMultiAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, DELTA_T_SAVE); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=500;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 void ColorMultiAnalysis::draw()
 {
     
@@ -182,12 +208,31 @@ void ColorMultiAnalysis::draw()
         case STATE_SYNTHESISING:
         {
             // display animation of something while the synthesis in on-going...
+            
             break;
         }
             
         case STATE_DISPLAY_RESULTS:
-        {
+        {   
-            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+            }
+            
             break;
         }
             
@@ -213,10 +258,14 @@ void ColorMultiAnalysis::save_cb(Timer& timer)
     
     // cout<<_whole_file_path<<endl;
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
+<<<<<<< HEAD
 <<<<<<< HEAD
    // _saved_filenames.push_back("/Users/tomschofield/of_preRelease_v007_osx/apps/myApps/refractiveIndexDavidFeb/bin/data/"+_whole_file_path+"/"+file_name);
     _saved_filenames.push_back("fish.jpg");
 
+=======
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+>>>>>>> tom
     if(_save_cnt >= NUM_SAVE_PER_RUN){
         _RUN_DONE = true;
     }
@@ -227,3 +276,11 @@ void ColorMultiAnalysis::save_cb(Timer& timer)
     //}
 >>>>>>> 88fa0375934e9ad87053542e88a0f9fe61af0a66
 }
+
+void ColorMultiAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/ColorMultiAnalysis.h

@@ -15,14 +15,15 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise();    
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt, _fade_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
-    ofImage image1;
 };

src/ColorSingleAnalysis.cpp

@@ -18,7 +18,7 @@ using Poco::Thread;
 
 void ColorSingleAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 300;
+    DELTA_T_SAVE = 100;//300;
     NUM_PHASE = 1;
     NUM_RUN = 1;
     NUM_SAVE_PER_RUN = 100;    
@@ -64,9 +64,72 @@ void ColorSingleAnalysis::acquire()
 void ColorSingleAnalysis::synthesise()
 {
     // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+
+            if(i<_saved_filenames.size()/3){
+                setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_RED), image2, &meshes[index]);
+            }
+            if(i>=_saved_filenames.size()/3 && i<2* _saved_filenames.size()/3){
+                setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_GREEN), image2, &meshes[index]);   
+            }
+            if(i>= 2* _saved_filenames.size()/3 && i<_saved_filenames.size()){
+                setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BLUE), image2, &meshes[index]);            
+            }
+            index++;
+        }
+    }
 }
 
-
+void ColorSingleAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<ColorSingleAnalysis> display_results_callback(*this, &ColorSingleAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=500;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 void ColorSingleAnalysis::draw()
 {
     
@@ -142,6 +205,25 @@ void ColorSingleAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+            }
+
             break;
         }
             
@@ -160,11 +242,21 @@ void ColorSingleAnalysis::save_cb(Timer& timer)
     
     string file_name =ofToString(_save_cnt,2)+"_"+fileNameTag+"_"+ofToString(_run_cnt,2)+".jpg";
     
+    //cout<<ofToString(_save_cnt,2)+"_"+fileNameTag+"_"+ofToString(_run_cnt,2)+".jpg";
+    cout<<file_name<<endl;
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
-    
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     //cout<<_whole_file_path+"/"+file_name<<endl;
     
     //if(_save_cnt >= NUM_SAVE_PER_RUN)
     //    _RUN_DONE = true;
 
 }
+void ColorSingleAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/ColorSingleAnalysis.h

@@ -19,15 +19,17 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
 
     bool    _RUN_DONE;
     string  fileNameTag;
     int     _run_cnt, _save_cnt, _fade_cnt;
-    float   r,g,b, _frame_cnt, _frame_cnt_max;
+    float   r,g,b, _frame_cnt, _frame_cnt_max , _results_cnt, _results_cnt_max;
 };

src/DiffNoiseAnalysis.cpp

@@ -59,11 +59,68 @@ void DiffNoiseAnalysis::acquire()
 
 void DiffNoiseAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
 
+void DiffNoiseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<DiffNoiseAnalysis> display_results_callback(*this, &DiffNoiseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}// this runs at frame rate = 33 ms for 30 FPS
 
-// this runs at frame rate = 33 ms for 30 FPS
 void DiffNoiseAnalysis::draw()
 {
     switch (_state) {
@@ -154,6 +211,28 @@ void DiffNoiseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+            
+
             break;
         }
             
@@ -188,7 +267,7 @@ void DiffNoiseAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
         
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     }
     _save_cnt++;
@@ -196,3 +275,11 @@ void DiffNoiseAnalysis::save_cb(Timer& timer)
     //    _RUN_DONE = true;
 
 }
+void DiffNoiseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/DiffNoiseAnalysis.h

@@ -19,15 +19,17 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt, _fade_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/IResponseAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Timer;
 using Poco::TimerCallback;
 using Poco::Thread;
 
+
+
 void IResponseAnalysis::setup(int camWidth, int camHeight)
 {
     DELTA_T_SAVE = 100;
@@ -55,11 +57,70 @@ void IResponseAnalysis::acquire()
     }
 }
 
+
 void IResponseAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+
 }
 
+void IResponseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<IResponseAnalysis> display_results_callback(*this, &IResponseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -90,6 +151,7 @@ void IResponseAnalysis::draw()
             
         case STATE_SYNTHESISING:
         {
+            
             // display animation of something while the synthesis in on-going...
             break;
         }
@@ -97,6 +159,26 @@ void IResponseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -120,9 +202,18 @@ void IResponseAnalysis::save_cb(Timer& timer)
     //RefractiveIndex::_pixels = RefractiveIndex::_vidGrabber.getPixelsRef(); //get ofPixels from the camera
     //    fileName = imageSaveFolderPath+whichAnalysis+"_"+ofToString(100.0*i*scanLineSpeed/ofGetHeight(),2)+"%_"+ofToString(i)+".jpg";
     //ofSaveImage(vectorOfPixels[i], fileName, OF_IMAGE_QUALITY_BEST);
-    
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     
     //if(_save_cnt >= NUM_SAVE_PER_RUN)
     //    _RUN_DONE = true;
 }
+void IResponseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/IResponseAnalysis.h

@@ -19,16 +19,18 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
-    
+    void display_results_cb(Poco::Timer& timer);
+
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
   
     
 };

src/RelaxRateAnalysis.cpp

@@ -18,7 +18,7 @@ using Poco::Thread;
 
 void RelaxRateAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 300;
+    DELTA_T_SAVE = 130;
     NUM_PHASE = 1;
     NUM_RUN = 3;
     NUM_SAVE_PER_RUN = 100;    
@@ -61,8 +61,67 @@ void RelaxRateAnalysis::acquire()
 
 void RelaxRateAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
+void RelaxRateAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<RelaxRateAnalysis> display_results_callback(*this, &RelaxRateAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
+
 
 // this runs at frame rate = 33 ms for 30 FPS
 void RelaxRateAnalysis::draw()
@@ -112,6 +171,27 @@ void RelaxRateAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -137,9 +217,16 @@ void RelaxRateAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, file, OF_IMAGE_QUALITY_BEST);
     
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     //if(_save_cnt >= NUM_SAVE_PER_RUN)
      //   _RUN_DONE = true;
 
 }
+void RelaxRateAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/RelaxRateAnalysis.h

@@ -20,16 +20,18 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     float     _flip, _level;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/ShadowScapesAnalysis.cpp

@@ -89,10 +89,67 @@ void ShadowScapesAnalysis::acquire()
 
 void ShadowScapesAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
 
 
+void ShadowScapesAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<ShadowScapesAnalysis> display_results_callback(*this, &ShadowScapesAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 // the animation draw - and the output draw
 void ShadowScapesAnalysis::draw()
 {
@@ -191,13 +248,33 @@ void ShadowScapesAnalysis::draw()
         {
             // display animation of something while the synthesis in on-going...
             
-            _state = STATE_DISPLAY_RESULTS;
             break;
         }
             
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -225,8 +302,16 @@ void ShadowScapesAnalysis::save_cb(Timer& timer)
     if(_dir == D) {
         file_name = ofToString(_save_cnt, 2)+"_D_"+ofToString(_line, 2)+"_"+ofToString(_run_cnt,2)+".jpg";
     }
-    
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;    
-
+    
 }
+void ShadowScapesAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/ShadowScapesAnalysis.h

@@ -51,10 +51,12 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
@@ -65,6 +67,6 @@ protected:
     float     _step;
     shadow_type _dir;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/ShapeFromShadingAnalysis.cpp

@@ -77,9 +77,69 @@ void ShapeFromShadingAnalysis::acquire()
     }
 }
 
+
 void ShapeFromShadingAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
+}
+
+void ShapeFromShadingAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<ShapeFromShadingAnalysis> display_results_callback(*this, &ShapeFromShadingAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
 }
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -323,6 +383,26 @@ void ShapeFromShadingAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -340,7 +420,8 @@ void ShapeFromShadingAnalysis::save_cb(Timer& timer)
     //cout << "ShapeFromShadingAnalysis::saving...\n";
     
     string file_name = ofToString(_save_cnt,2)+"_"+ quad +"_"+ofToString(_run_cnt,2)+".jpg";
-    
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;
     
@@ -348,3 +429,11 @@ void ShapeFromShadingAnalysis::save_cb(Timer& timer)
     //    _RUN_DONE = true;
 
 }
+void ShapeFromShadingAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/ShapeFromShadingAnalysis.h

@@ -20,10 +20,12 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
@@ -48,6 +50,6 @@ protected:
     int _animation_cnt15;
     int _animation_cnt16;
     int _animation_reset;  // this reset part didn't get working - so using 16 different counters! yay! 
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/StrobeAnalysis.cpp

@@ -64,7 +64,66 @@ void StrobeAnalysis::acquire()
 
 void StrobeAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    float iterator=1;
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
+}
+
+void StrobeAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<StrobeAnalysis> display_results_callback(*this, &StrobeAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
 }
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -139,6 +198,26 @@ void StrobeAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -153,6 +232,8 @@ void StrobeAnalysis::draw()
 void StrobeAnalysis::save_cb(Timer& timer)
 {
     string file_name = ofToString(_save_cnt,2)+"_"+ ofToString(_strobe_on) +"_"+ofToString(_run_cnt,2)+".jpg";
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;
     
@@ -166,3 +247,12 @@ void StrobeAnalysis::save_cb(Timer& timer)
     //}
 
 }
+
+void StrobeAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/StrobeAnalysis.h

@@ -20,10 +20,12 @@ public:
     
     void setup(int camWidth, int camHeight);
     void acquire();
-    void synthesise();    
+    void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);    
     
 protected:
     
@@ -32,6 +34,8 @@ protected:
     int     _save_cnt;
     
     int     _frame_cnt, _frame_cnt_max, _save_cnt_max ;
+    float   _results_cnt, _results_cnt_max;
+    
     int     _strobe_interval;
     bool    _strobe_on;
 };