corrected file confusion AGAIN

src/AbstractAnalysis.cpp

@@ -41,6 +41,7 @@ void AbstractAnalysis::do_synthesize() {
     _state = STATE_SYNTHESISING;
     synthesise();
     _state = STATE_DISPLAY_RESULTS;
+    display_results();
     ofNotifyEvent(_synthesize_cb, _name);
 }
 
@@ -143,6 +144,69 @@ ofPixels AbstractAnalysis::calculateListOfZValues(ofImage image1, ofImage image2
     
 }
 
+ofPixels AbstractAnalysis::calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison, int colourValue){
+    //zScale is the mapping factor from pixel difference to shift on the zPlane
+    int zScale=200;
+    
+    ofPixels imagePixels1 = image1.getPixelsRef();
+    ofPixels imagePixels2 = image2.getPixelsRef();
+    
+    ofPixels difference;
+    //this unsigned char should be unnecessary - I would have thought - can't you just address the pixel locations in ofPixels directly? 
+    unsigned char * thesePixels = new unsigned char[ imagePixels1.getWidth()*imagePixels1.getHeight()*3];
+    
+    //where are we in the image pixel array
+    int x=0;
+    int y=0;
+    
+    //for each pixel...
+    for(int i=0;i<imagePixels1.size();i+=3){
+        
+        //get the colour of each image at this x y location - we will use these colours for comparison according to the below criteria
+        ofColor colourImage1 = imagePixels1.getColor(x, y);
+        ofColor colourImage2 = imagePixels2.getColor(x, y);
+        
+        //COMPARE THIS PIXEL'S VALUES with the first image in the sequence
+        int thisDiff;
+        //compare Red
+        if (whichComparison==1) {
+            thisDiff=ofMap((colourImage1.r-colourImage2.r),-255,255,0,zScale);
+        }
+        //compare blue
+        if (whichComparison==2) {
+            thisDiff=ofMap((colourImage1.g-colourImage2.g),-255,255,0,zScale);
+        }
+        //compare green
+        if (whichComparison==3) {
+            thisDiff=ofMap((colourImage1.b-colourImage2.b),-255,255,0,zScale);
+        }
+        //compare hue
+        if (whichComparison==4) {
+            thisDiff=ofMap((colourImage1.getHue()-colourImage2.getHue()),-255,255,0,zScale);
+        }
+        //compare brightness
+        if (whichComparison==5) {
+            thisDiff=ofMap((colourImage1.getBrightness()-colourImage2.getBrightness()),-255,255,0,zScale);
+        }
+        thesePixels[i]=thisDiff;
+        thesePixels[i+1]=thisDiff;
+        thesePixels[i+2]=thisDiff;
+        
+        x++;
+        //new line
+        if(x>imagePixels1.getWidth()){
+            x=0;
+            y++;
+            
+        }
+    }
+    
+    difference.setFromPixels(thesePixels,imagePixels1.getWidth(),imagePixels1.getHeight(), 3);
+    
+    return difference;
+    
+}
+
 void AbstractAnalysis::setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh){
     int x=0;
     int y=0;
@@ -165,3 +229,55 @@ void AbstractAnalysis:: setMeshFromPixels(ofPixels somePixels, ofImage currentSe
     }
     
 }
+
+vector<string>AbstractAnalysis:: getListOfImageFilePaths(string location, string whichAnalysis){
+    
+    string path = ofToDataPath("")+"debug_analysis/"+location+"/"+whichAnalysis;
+    ofxDirList dirList;
+    
+    int numDirs = dirList.listDir(path);
+    
+    vector<string>directoryNames;
+    
+    //get the last folder alphabetically - this should probably change to do something fancy with date to find most recent but don't want to code that until we are sure
+    string dirName=dirList.getName(numDirs-1);
+    
+    
+    const char *results=dirName.c_str();
+    
+    ofFile file=ofFile(path+"/"+dirName);
+    vector<string>fileNamesToReturn;
+    
+    
+    // get 
+    if(file.isDirectory()){
+        dirList.listDir(path+"/"+dirName);
+        //if there are no files, exit here
+        if(dirList.size()==0){
+            //if it's empty return an error warning
+            fileNamesToReturn.push_back("NO FILE HERE!");
+            cout<<"NO FILE HERE!";
+            return fileNamesToReturn;
+        }
+        for (int i=0; i<dirList.size(); i++) {
+            
+            string fname=dirList.getName(i);
+            const char *results=fname.c_str();
+            
+            //full path is what actually gets written into the vector
+            string fullPath=path+"/"+dirName+"/"+fname;
+            
+            
+            fileNamesToReturn.push_back(fullPath);
+        }
+    }
+    else{
+        cout<<"WARNING, DIRECTORY NOT FOUND";
+        fileNamesToReturn.push_back("NO FILE HERE!");
+    }
+    
+    
+    
+    
+    return fileNamesToReturn;
+}

src/AbstractAnalysis.h

@@ -40,10 +40,18 @@ protected:
     // analysis + synthesize images - all the children (see - do_synthesize)
     virtual void synthesise() = 0;   
    
-    virtual ofPixels calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison);
+    //added tom s 19/2 function runs a call back exactly like acquire.
+    virtual void display_results() = 0;   
     
+    //returns ofPixels which contain the color differences between the two images. Is overloaded to include comparison with values written in to file names for some analyses
+    virtual ofPixels calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison);
+    virtual ofPixels calculateListOfZValues(ofImage image1, ofImage image2, int whichComparison, int colourValue);
+    
+    //uses the returned pixels from make3DZmap to make a mesh of points whose Z positions are set by the brightness values in ofPixels - ofPixels is being used as a convenient container for a bunch of z coordinates
     virtual void setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh);
     
+    //this is purely for debug purposes and loads old images from middlesborough test 
+    virtual vector<string> getListOfImageFilePaths(string location, string whichAnalysis);
 public:
     string  _name;    
     

src/ColorSingleAnalysis.cpp

@@ -77,7 +77,7 @@ void ColorSingleAnalysis::synthesise()
     int index=0;
     
     //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
-    bool debug=false;
+    bool debug=true;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);