if(_save_cnt >= NUM_SAVE_PER_RUN) _RUN_DONE = true;
and using max_frame_cnt as the end condition for the run being finished...
not sure if this is working the way it should... need to think through the math of the frameRate/timing calculations in the setup for each class
* removed unused and unneeded classes and added the ones that were
missing
* put the most recent graphics code into David's great structural org!
current issues:
* the config file is still not loading at the start of the code (only
in RefractiveIndex.cpp does it work - not in main.cpp - where the 'full
screen', etc. are set
* the analyses being called in RefractiveIndex.cpp always run the first
listed one twice - weird!
* the saving (NUM_SAVE_PER_RUN) and frame (_frame_cnt_max) conditions
are competing - can we relate them?
