added file name sorting code to abrastract analysis

there does seem to be some kind of strange file saving ordering problem
going on... into the 'drawing' --> folder. will look at it and try and
see what its doing wrong

config.refindx

@@ -1,6 +1,7 @@
 <!-- THIS FILE NEEDS TO GO IN THE APPLICATION /data/ folder -->
 
 <config>
+    <mode>drawing</mode>
 	<camera>
 		<id>1</id>
 		<width>640</width>
@@ -38,7 +39,7 @@
     </analysis_time>
     
     <relaxrate>
-<threshold>51</threshold>
+        <treshold>51</treshold>
         <maxblobs>25</maxblobs>
     </relaxrate>
     

src/AbstractAnalysis.cpp

@@ -3,10 +3,32 @@
 #include "AbstractAnalysis.h"
 #include "RefractiveIndex.h"
 #include "ofxFileHelper.h"
+#include "ofSystemUtils.h"
+
+void AbstractAnalysis::setup(int camWidth, int camHeight) {
+    
+    _cam_w = camWidth; _cam_h = camHeight;
+    
+    if(RefractiveIndex::_mode == MODE_DRAWING) {
+        ofFileDialogResult r = ofSystemLoadDialog("choooose da folda", true);
+        if(!r.bSuccess) {
+            ofSystemAlertDialog("OOOOPS.... ERROR...");
+            return;
+        }
+                
+        _whole_file_path_analysis = r.filePath;
+        _whole_file_path_synthesis = r.filePath + "/darwings";        
+    }
+    
+}
 
 // this is the main threaded loop for a given analysis
 void AbstractAnalysis::do_synthesize() {
     
+    switch(RefractiveIndex::_mode)
+    {
+        case MODE_ANALYSING:
+        {
             for(int i = 0; i < NUM_RUN; i++) {
                 
                 cout << "NUM_RUN: " << i << endl;
@@ -24,10 +46,29 @@ void AbstractAnalysis::do_synthesize() {
                 displayresults();
                 cleanup();
             }                    
+        }
+            
+        case MODE_DRAWING:
+        {            
+            ofxFileHelper fileHelperDrawing;
+            if(!fileHelperDrawing.doesDirectoryExist(_whole_file_path_synthesis)){
+                fileHelperDrawing.makeDirectory(_whole_file_path_synthesis);
+            }            
+            
+            read_dir_create_list(_whole_file_path_analysis);
+            _state = STATE_SYNTHESISING;
+            synthesise();
+            if(_state == STATE_STOP) goto exit;
+            _state = STATE_DISPLAY_RESULTS;
+            displayresults();
+            cleanup();            
+        }
+    }
     
 exit:    
     cleanup();
     ofNotifyEvent(_synthesize_cb, _name);    
+    
 }
 
 void AbstractAnalysis::create_dir_allocate_images()
@@ -116,6 +157,57 @@ void AbstractAnalysis::create_dir_allocate_images()
 
 }
 
+
+
+
+bool cmp_file(string f0, string f1)
+
+{
+    
+    int v0 = atoi(f0.substr(0, f0.find("_")).c_str());
+    
+    int v1 = atoi(f1.substr(0, f1.find("_")).c_str());    
+    
+    return v0 < v1;
+    
+}
+
+
+
+void AbstractAnalysis::read_dir_create_list(string folder_path)
+
+{
+    
+    File dir(folder_path);
+    
+    
+    
+    if(dir.exists() && dir.isDirectory()) {
+        
+        vector<string> list;
+        
+        dir.list(list);   
+        
+        
+        
+        std::sort(list.begin(), list.end(), cmp_file);
+        
+        
+        
+        for(int i = 0; i < list.size(); i++) {
+            
+            string filepath = folder_path + "/" + list[i]; 
+            
+            _saved_filenames_analysis.push_back(filepath);
+            
+        }                
+        
+    }
+}
+
+
+
+
 void AbstractAnalysis::saveImageAnalysis(string filename)
 {
     
@@ -181,5 +273,6 @@ void AbstractAnalysis::saveImageSynthesis(string filename, ofxCvImage* newPixels
     
     _saved_filenames_synthesis.push_back(_whole_file_path_synthesis+"/"+filename);
             
+    
 }
 

src/AbstractAnalysis.h

@@ -25,7 +25,7 @@ public:
     virtual ~AbstractAnalysis(){;}
     
     // generic function to set up the camera
-    virtual void setup(int camWidth, int camHeight){_cam_w = camWidth; _cam_h = camHeight;}  
+    virtual void setup(int camWidth, int camHeight);  
 
     // this is the main threaded loop for a given analysis
     void do_synthesize();
@@ -37,6 +37,8 @@ protected:
     
     virtual void create_dir_allocate_images();
     
+    virtual void read_dir_create_list(string folder_path);
+    
     virtual void saveImageAnalysis(string filename);
     virtual void saveImageSynthesis(string filename, ofxCvImage* newPixels, ofImageType newType);
     
@@ -55,6 +57,7 @@ protected:
         
 public:
     string  _name;       
+    string  _draw_directory;
     
     // event
     ofEvent<string> _synthesize_cb;    

src/CamNoiseAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void CamNoiseAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_camnoise", NUMBER_RUNS);
     cout << "NUM_RUN CamNoiseAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;

src/ColorMultiAnalysis.cpp

@@ -14,6 +14,8 @@ using Poco::Thread;
 
 void ColorMultiAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_colormulti", NUMBER_RUNS);
     cout << "NUM_RUN ColorMultiAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;
@@ -246,6 +248,8 @@ void ColorMultiAnalysis::draw()
                     //cout << "FADING IN..." << endl;
                 }
                 
+                
+                
                 if (_frame_cnt >= _fade_in_frames && _frame_cnt < _frame_cnt_max-_fade_in_frames){
                     
                     aColor.setHsb(c, 255, 255);

src/ColorSingleAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void ColorSingleAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_colorsingle", NUMBER_RUNS);
     cout << "NUM_RUN ColorSingleAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;
@@ -124,6 +126,7 @@ void ColorSingleAnalysis::acquire()
     
     save_timer->stop();
     
+    
     // }
 }
 
@@ -136,103 +139,11 @@ void ColorSingleAnalysis::synthesise()
     for(float i=1;i<_saved_filenames_analysis.size()-1;i++){
         
         //cout << "ColorSingleAnalysis::synthesis FOR LOOP...\n";
+        
         //cout << "_saved_filenames_analysis[i]" << _saved_filenames_analysis[i] << endl;
         
         if(_state == STATE_STOP) return;
         
-        image1.loadImage("Mar_02_19_00_47_2/194_9.72_1.jpg");
-        image1.resize(image1.width/20, image1.height/20);
-        
-        int width = image1.width;
-        int height = image1.height;
-        
-        // get the pixels from the image
-        imagePixels = image1.getPixels();
-        
-        // ------------------- create the vector field ------------------------------------
-        
-        vectorCount = width * height;
-        
-        // create a 2d vector field
-        vectorField = new ofVec2f[vectorCount];
-        
-        // set all values in vector field to 0.0
-        for(int i=0; i<vectorCount; i++){
-            
-            vectorField[i].x = 0.0;
-            vectorField[i].y = 0.0;
-        }
-        
-        
-        // ------------------- calculate the vectors ------------------------------------
-        
-        // loop through all of the pixels
-        for(int x=1; x< width-1; x++){
-            for(int y=1; y< height-1; y++){
-                
-                char areaPixels[9];
-                
-                // loop through the area pixels
-                for(int i=-1; i<=1; i++){
-                    for(int j=-1; j<=1; j++){
-                        
-                        // determine where to read from in the area (not optimized)
-                        int readPos = ((y + j) * width + (x + i)) * 3;
-                        
-                        unsigned char R = imagePixels[readPos];
-                        unsigned char G = imagePixels[readPos+1];
-                        unsigned char B = imagePixels[readPos+2];
-                        
-                        unsigned char BR = (0.299 * R) + (.587 * G) + (.114 * B);
-                        
-                        int writePos = (j+1) * 3 + (i + 1);
-                        
-                        areaPixels[writePos] = BR;
-                    }
-                }
-                
-                
-                
-                float dX = (areaPixels[0] + areaPixels[3] + areaPixels[6])/3 - (areaPixels[2] + areaPixels[5] + areaPixels[8])/3;
-                float dY = (areaPixels[0] + areaPixels[1] + areaPixels[2])/3 - (areaPixels[6] + areaPixels[7] + areaPixels[8])/3;
-                
-                int vectorPos = y * width + x;
-                
-                //printf("dx %f\n", dX);
-                
-                vectorField[vectorPos].x = dX;
-                vectorField[vectorPos].y = dY;
-                
-                //vectorField[vectorPos].x = -dY;
-                //vectorField[vectorPos].y = dX;
-                
-            }
-        }
-        
-        
-        
-        // ------------------- normalize the vectors ------------------------------------
-        
-        // variables for the maximum magnitude (absolute) in x and y
-        float maxMagX = 1.0;
-        float maxMagY = 1.0;
-        
-        // loop through the vector field to find the maximum x and y values
-        for(int i=0; i< vectorCount; i++){
-            
-            if(fabs(vectorField[i].x) > maxMagX)  maxMagX = fabs(vectorField[i].x);
-            if(fabs(vectorField[i].y) > maxMagY)  maxMagY = fabs(vectorField[i].y);
-        }
-        
-        // loop through the vector field to normalize the values
-        for(int i=0; i< vectorCount; i++){
-            
-            vectorField[i].x /= maxMagX;
-            vectorField[i].y /= maxMagY;
-        }
-        
-        // COMMENTING OUT THE FILLER SYNTH ALGORITHM
-        /*  
         if(!image1.loadImage(_saved_filenames_analysis[i])){
             //couldn't load image
             cout << "didn't load image" << endl;
@@ -271,7 +182,7 @@ void ColorSingleAnalysis::synthesise()
             //ofImage image;
             //image.allocate(cvColorImage1.width, cvColorImage1.height, OF_IMAGE_COLOR);
             
-                // This needs to be here for OSX of we get a BAD ACCESS ERROR. DOES IT BREAK WINDOWS? 
+            //*** This needs to be here for OSX of we get a BAD ACCESS ERROR. DOES IT BREAK WINDOWS? ***//
             //image.setUseTexture(false);  
             
             //image.setFromPixels(cvColorImage1.getPixels(), cvColorImage1.width, cvColorImage1.height,OF_IMAGE_COLOR);
@@ -285,10 +196,7 @@ void ColorSingleAnalysis::synthesise()
             _synth_save_cnt++;
             
             // }
-        
         }
-         */
-        
     }
     
     // _saved_filenames_synthesis has processed all the files in the analysis images folder
@@ -297,23 +205,8 @@ void ColorSingleAnalysis::synthesise()
     
 }
 
-// 
 void ColorSingleAnalysis::displayresults()
 {
-    
-    if(_state == STATE_STOP) return;
-    
-    _show_image = true;
-    _image_shown = false;
-    
-    //cout << "_saved_filenames_analysis[i] - " << _saved_filenames_synthesis[i] << endl;
-    
-    while(!_image_shown){
-        Thread::sleep(2);
-        //cout << "!_image_shown" << endl;
-    }
-    
-    /*
     for(float i=1;i<_saved_filenames_synthesis.size();i++){
         
         if(_state == STATE_STOP) return;
@@ -337,7 +230,6 @@ void ColorSingleAnalysis::displayresults()
             _image_shown = false;
         }
     }
-    */
     
 }
 
@@ -348,6 +240,8 @@ void ColorSingleAnalysis::draw()
     switch (_state) {
         case STATE_ACQUIRING:
         {
+            
+            
             if (_frame_cnt < _frame_cnt_max)
             {
                 
@@ -493,49 +387,9 @@ void ColorSingleAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             
-            cout << "case STATE_DISPLAY_RESULTS = true" << endl;
-
-            int width = image1.width;
-            int height = image1.height;
-            float spacing = 10;
-            
-            if (_frame_cnt > 2000)
-            {
-                _image_shown = true;
-                _frame_cnt=0;
-            }
-            
-            _frame_cnt++;
-
-            if (_show_image)
-            {  
-                
-                
-                cout << "_show_image = true" << endl;
-               
-                for(int x=0; x<width; x++){
-                    
-                    float xPos = (float) x * spacing + 5;
-                    
-                    for(int y=0; y<height; y++){
-                        float yPos = (float)y * spacing + 5;
-                        glPushMatrix();
-                            ofLine(xPos, yPos, xPos+(vectorField[y*width+x].x*spacing), yPos+(vectorField[y*width+x].y*spacing));
-                        glPopMatrix();
-                    }
-                }
-                
-                //this is where we save the full-frame software output to file... after the vectors, etc. are rendered... 
-                //saveImageSynthesis(file_name, &cvColorImage1, OF_IMAGE_COLOR);
-                
-            }
-            
-            _RUN_DONE = true;
-            break;
-
-            /*
             //cout << "STATE_DISPLAY_RESULTS...\n" << endl;
             
+            
             if (_frame_cnt > 2)
             {
                 _image_shown = true;
@@ -560,9 +414,10 @@ void ColorSingleAnalysis::draw()
             // display results of the synthesis
             _RUN_DONE = true;
             break;
-            */
+            
             
         }
+            
         default:
             break;
     }

src/DiffNoiseAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void DiffNoiseAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_diffnoise", NUMBER_RUNS);
     cout << "NUM_RUN DiffNoiseAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;

src/IResponseAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void IResponseAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+        
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_iresponse", NUMBER_RUNS);
     cout << "NUM_RUN IResponseAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;

src/RelaxRateAnalysis.cpp

@@ -12,11 +12,13 @@ using Poco::Thread;
 
 #define NUMBER_RUNS     1
 #define ACQUIRE_TIME    20
-#define THRESHOLD        80
+#define TRESHOLD        80
 #define MAXBLOBS        15
 
 void RelaxRateAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_relaxrate", NUMBER_RUNS);
     cout << "NUM_RUN RelaxRateAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;
@@ -25,8 +27,8 @@ void RelaxRateAnalysis::setup(int camWidth, int camHeight)
     acq_run_time = RefractiveIndex::XML.getValue("config:analysis_time:acquiretime_relaxrate", ACQUIRE_TIME);
     cout << "ACQUIRE_TIME RelaxRateAnalysis " << acq_run_time << endl;
     
-    _threshold = RefractiveIndex::XML.getValue("config:relaxrate:threshold", THRESHOLD);
-    cout << "THRESHOLD RelaxRateAnalysis " << _threshold << endl;
+    _treshold = RefractiveIndex::XML.getValue("config:relaxrate:treshold", TRESHOLD);
+    cout << "TRESHOLD RelaxRateAnalysis " << _treshold << endl;
     
     _maxblobs = RefractiveIndex::XML.getValue("config:relaxrate:maxblobs", MAXBLOBS);
     cout << "MAXBLOBS RelaxRateAnalysis " << _maxblobs << endl;
@@ -116,7 +118,7 @@ void RelaxRateAnalysis::synthesise()
             cvColorImage1.setFromPixels(image1.getPixels(), image1.width, image1.height);            
             cvColorImage1.convertToGrayscalePlanarImage(cvGrayDiff1, 1);
             
-            cvGrayDiff1.threshold(_threshold);
+            cvGrayDiff1.threshold(_treshold);
             
             rfiCvContourFinder* cf = new rfiCvContourFinder();
             

src/RelaxRateAnalysis.h

@@ -39,7 +39,7 @@ protected:
     int     _run_cnt, _save_cnt, _synth_save_cnt, _anim_cnt;
     float   c, _frame_cnt, _frame_cnt_max, _anim_cnt_max;
     
-    int     _threshold;
+    int     _treshold;
     int     _maxblobs;
     
     bool _show_image, _image_shown;

src/ShadowScapesAnalysis.cpp

@@ -19,6 +19,8 @@ using Poco::Thread;
 
 void ShadowScapesAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_shadowscapes", NUMBER_RUNS);
     cout << "NUM_RUN ShadowScapesAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;

src/ShapeFromShadingAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void ShapeFromShadingAnalysis::setup(int camWidth, int camHeight)
 {       
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_shapefromshading", NUMBER_RUNS);
     cout << "NUM_RUN ShapeFromShadingAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;

src/StrobeAnalysis.cpp

@@ -15,6 +15,8 @@ using Poco::Thread;
 
 void StrobeAnalysis::setup(int camWidth, int camHeight)
 {
+    AbstractAnalysis::setup(camWidth, camHeight);
+    
     NUM_RUN = RefractiveIndex::XML.getValue("config:analysis_NUM_RUN:NUM_RUN_strobe", NUMBER_RUNS);
     cout << "NUM_RUN StrobeAnalysis " << NUM_RUN << endl;
     //NUM_RUN = 5;