added synthesise and display results to all analysis classes

src/AbstractAnalysis.cpp

@@ -233,8 +233,8 @@ void AbstractAnalysis::setMeshFromPixels(ofPixels somePixels, ofImage currentSec
 vector<string>AbstractAnalysis:: getListOfImageFilePaths(string location, string whichAnalysis){
     
     string path = ofToDataPath("")+"debug_analysis/"+location+"/"+whichAnalysis;
-    ofxDirList dirList;
+    //ofxDirList dirList;
-    
+    ofDirectory dirList;
     int numDirs = dirList.listDir(path);
     
     vector<string>directoryNames;
@@ -281,3 +281,35 @@ vector<string>AbstractAnalysis:: getListOfImageFilePaths(string location, string
     
     return fileNamesToReturn;
 }
+int AbstractAnalysis::getRecordedValueFromFileName(string str){
+    //split filename by underscore - there HAS to be a quicker way of doing things - its ONE LINE in java :(
+    char * cstr, *p;
+    vector<char *>tokens;
+    //string str ("Please split this phrase into tokens");
+    
+    //make char pointer array
+    cstr = new char [str.size()+1];
+    //copy string to char pointer array
+    strcpy (cstr, str.c_str());
+    
+    //tokenise char p array and put first results into pointer?
+    p=strtok (cstr,"_");
+    
+    while (p!=NULL)
+    {
+        p=strtok(NULL,"_");
+        //push tokenised char into vector
+        tokens.push_back(p);
+        
+    }
+    delete[] cstr; 
+    char *p1;
+    //cstr = new char [str.size()+1];
+    //strcpy (cstr, str.c_str());
+    
+    p1=strtok (tokens[tokens.size()-2],".");
+    
+    return ofToInt(p1);
+}
+
+

src/AbstractAnalysis.h

@@ -16,6 +16,12 @@
 #define STATE_DISPLAY_RESULTS   0x3333
 #define STATE_STOP              0xDEADBEEF
 
+#define COMPARE_RED 1
+#define COMPARE_BLUE 2
+#define COMPARE_GREEN 3
+#define  COMPARE_HUE 4
+#define COMPARE_BRIGHTNESS 5
+
 class AbstractAnalysis {
     
 public:
@@ -49,9 +55,15 @@ protected:
     
     //uses the returned pixels from make3DZmap to make a mesh of points whose Z positions are set by the brightness values in ofPixels - ofPixels is being used as a convenient container for a bunch of z coordinates
     virtual void setMeshFromPixels(ofPixels somePixels, ofImage currentSecondImage, ofMesh * someMesh);
+    //HELPER FUNCTIONS
     
-    //this is purely for debug purposes and loads old images from middlesborough test 
+    //this is purely for debug/viewing purposes and loads old images from middlesborough test
     virtual vector<string> getListOfImageFilePaths(string location, string whichAnalysis);
+    
+    //splits up the filename and returns the recorded value eg brightness
+    //EG FILENAME : DIFF_NOISE_7_85.7322.jpg RETURNS : 85.7322
+    virtual int getRecordedValueFromFileName(string str);
+    
 public:
     string  _name;    
     

src/CamNoiseAnalysis.cpp

@@ -18,7 +18,7 @@ using Poco::Thread;
 
 void CamNoiseAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 200;
+    DELTA_T_SAVE = 100;//200;
     NUM_PHASE = 1;
     NUM_RUN = 1;
     NUM_SAVE_PER_RUN = 100;    
@@ -59,9 +59,62 @@ void CamNoiseAnalysis::acquire()
 
 void CamNoiseAnalysis::synthesise()
 {
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=true;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_hue_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE,_recorded_hue_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
     
 }
 
+void CamNoiseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<CamNoiseAnalysis> display_results_callback(*this, &CamNoiseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -128,6 +181,27 @@ void CamNoiseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -151,9 +225,15 @@ void CamNoiseAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     if(_save_cnt >= NUM_SAVE_PER_RUN)
         _RUN_DONE = true;
 
 }
+void CamNoiseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}

src/CamNoiseAnalysis.h

@@ -20,15 +20,17 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max,_save_cnt_max ;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
 
     
 };

src/ColorMultiAnalysis.cpp

@@ -41,11 +41,7 @@ using Poco::Timer;
 using Poco::TimerCallback;
 using Poco::Thread;
 
-#define COMPARE_RED 1
+
-#define COMPARE_BLUE 2
-#define COMPARE_GREEN 3
-#define  COMPARE_HUE 4
-#define COMPARE_BRIGHTNESS 5
 
 void ColorMultiAnalysis::setup(int camWidth, int camHeight)
 {
@@ -98,15 +94,15 @@ void ColorMultiAnalysis::synthesise()
     int index=0;
     
     //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
-    bool debug=true;
+    bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
     }
-    
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
     for(int i=0;i<_saved_filenames.size()-2;i+=2){
 
-        meshes.push_back(ofMesh());
         ofImage image1;
         ofImage image2;
         
@@ -116,6 +112,7 @@ void ColorMultiAnalysis::synthesise()
         //some of the textures are not loading correctly so only make mesh if both the images load
         if(image1.loadImage(_saved_filenames[0]) && image2.loadImage(_saved_filenames[i+1])){
             cout<<"setting mesh"<<endl;
+            meshes.push_back(ofMesh());
             setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE), image2, &meshes[index]);            
             index++;
             }

src/ColorSingleAnalysis.cpp

@@ -15,11 +15,6 @@ using Poco::Timer;
 using Poco::TimerCallback;
 using Poco::Thread;
 
-#define COMPARE_RED 1
-#define COMPARE_BLUE 2
-#define COMPARE_GREEN 3
-#define  COMPARE_HUE 4
-#define COMPARE_BRIGHTNESS 5
 
 void ColorSingleAnalysis::setup(int camWidth, int camHeight)
 {
@@ -77,15 +72,15 @@ void ColorSingleAnalysis::synthesise()
     int index=0;
     
     //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
-    bool debug=false;
+    bool debug=true;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
     }
-    
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
     for(int i=1;i<_saved_filenames.size()-2;i+=2){
         
-        meshes.push_back(ofMesh());
         ofImage image1;
         ofImage image2;
         
@@ -94,6 +89,7 @@ void ColorSingleAnalysis::synthesise()
         image2.setUseTexture(false);
         //some of the textures are not loading correctly so only make mesh if both the images load
         if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
 
             if(i<_saved_filenames.size()/3){
                 setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_RED), image2, &meshes[index]);
@@ -116,7 +112,7 @@ void ColorSingleAnalysis::display_results(){
     TimerCallback<ColorSingleAnalysis> display_results_callback(*this, &ColorSingleAnalysis::display_results_cb);
     // display results of the synthesis
     
-    display_results_timer = new Timer(0, DELTA_T_SAVE); // timing interval for saving files
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
     display_results_timer->start(display_results_callback);
     _RUN_DONE = false;
     _results_cnt=0;

src/DiffNoiseAnalysis.cpp

@@ -18,7 +18,7 @@ using Poco::Thread;
 
 void DiffNoiseAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 600;  // right number is about 450
+    DELTA_T_SAVE = 100;//600;  // right number is about 450
     NUM_PHASE = 1;
     NUM_RUN = 1;
     NUM_SAVE_PER_RUN = 50;    
@@ -59,11 +59,63 @@ void DiffNoiseAnalysis::acquire()
 
 void DiffNoiseAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=true;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_HUE,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
 
+void DiffNoiseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<DiffNoiseAnalysis> display_results_callback(*this, &DiffNoiseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}// this runs at frame rate = 33 ms for 30 FPS
 
-// this runs at frame rate = 33 ms for 30 FPS
 void DiffNoiseAnalysis::draw()
 {
     switch (_state) {
@@ -144,6 +196,28 @@ void DiffNoiseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+            
+
             break;
         }
             
@@ -178,7 +252,7 @@ void DiffNoiseAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
         
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     }
     _save_cnt++;
@@ -186,3 +260,11 @@ void DiffNoiseAnalysis::save_cb(Timer& timer)
         _RUN_DONE = true;
 
 }
+void DiffNoiseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/DiffNoiseAnalysis.h

@@ -20,14 +20,16 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt, _fade_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/IResponseAnalysis.cpp

@@ -15,12 +15,14 @@ using Poco::Timer;
 using Poco::TimerCallback;
 using Poco::Thread;
 
+
+
 void IResponseAnalysis::setup(int camWidth, int camHeight)
 {
     DELTA_T_SAVE = 100;
     NUM_PHASE = 1;
     NUM_RUN = 1;
-    NUM_SAVE_PER_RUN = 100;    
+    NUM_SAVE_PER_RUN = 50;//100;    
     
     create_dir();
     _frame_cnt = 0;
@@ -55,11 +57,65 @@ void IResponseAnalysis::acquire()
     }
 }
 
+
 void IResponseAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=true;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+
 }
 
+void IResponseAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<IResponseAnalysis> display_results_callback(*this, &IResponseAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -88,6 +144,7 @@ void IResponseAnalysis::draw()
             
         case STATE_SYNTHESISING:
         {
+            
             // display animation of something while the synthesis in on-going...
             break;
         }
@@ -95,6 +152,26 @@ void IResponseAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -118,9 +195,18 @@ void IResponseAnalysis::save_cb(Timer& timer)
     //RefractiveIndex::_pixels = RefractiveIndex::_vidGrabber.getPixelsRef(); //get ofPixels from the camera
     //    fileName = imageSaveFolderPath+whichAnalysis+"_"+ofToString(100.0*i*scanLineSpeed/ofGetHeight(),2)+"%_"+ofToString(i)+".jpg";
     //ofSaveImage(vectorOfPixels[i], fileName, OF_IMAGE_QUALITY_BEST);
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     
     if(_save_cnt >= NUM_SAVE_PER_RUN)
         _RUN_DONE = true;
 }
+void IResponseAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/IResponseAnalysis.h

@@ -20,15 +20,17 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
 
 protected:
     
     bool    _RUN_DONE;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
   
     
 };

src/RelaxRateAnalysis.cpp

@@ -18,10 +18,10 @@ using Poco::Thread;
 
 void RelaxRateAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 300;
+    DELTA_T_SAVE = 100;//300;
     NUM_PHASE = 1;
     NUM_RUN = 1;
-    NUM_SAVE_PER_RUN = 100;    
+    NUM_SAVE_PER_RUN = 50;//100;    
     
     create_dir();
     
@@ -61,8 +61,62 @@ void RelaxRateAnalysis::acquire()
 
 void RelaxRateAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=true;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
+void RelaxRateAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<RelaxRateAnalysis> display_results_callback(*this, &RelaxRateAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
+
 
 // this runs at frame rate = 33 ms for 30 FPS
 void RelaxRateAnalysis::draw()
@@ -111,6 +165,27 @@ void RelaxRateAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -136,9 +211,16 @@ void RelaxRateAnalysis::save_cb(Timer& timer)
 
     ofSaveImage(RefractiveIndex::_pixels, file, OF_IMAGE_QUALITY_BEST);
     
-    _saved_filenames.push_back(file);
+    _saved_filenames.push_back(ofToDataPath("")+file);
 
     if(_save_cnt >= NUM_SAVE_PER_RUN)
         _RUN_DONE = true;
 
 }
+void RelaxRateAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/RelaxRateAnalysis.h

@@ -21,15 +21,17 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
     bool    _RUN_DONE;
     float     _flip, _level;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/ShadowScapesAnalysis.cpp

@@ -89,10 +89,62 @@ void ShadowScapesAnalysis::acquire()
 
 void ShadowScapesAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
 }
 
 
+void ShadowScapesAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<ShadowScapesAnalysis> display_results_callback(*this, &ShadowScapesAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
+}
 // the animation draw - and the output draw
 void ShadowScapesAnalysis::draw()
 {
@@ -191,13 +243,33 @@ void ShadowScapesAnalysis::draw()
         {
             // display animation of something while the synthesis in on-going...
             
-            _state = STATE_DISPLAY_RESULTS;
             break;
         }
             
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -225,8 +297,16 @@ void ShadowScapesAnalysis::save_cb(Timer& timer)
     if(_dir == D) {
         file_name = ofToString(_save_cnt, 2)+"_D_"+ofToString(_line, 2)+"_"+ofToString(_run_cnt,2)+".jpg";
     }
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;    
     
 }
+void ShadowScapesAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+

src/ShadowScapesAnalysis.h

@@ -52,9 +52,11 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
@@ -65,6 +67,6 @@ protected:
     float     _step;
     shadow_type _dir;
     int     _run_cnt, _save_cnt;
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/ShapeFromShadingAnalysis.cpp

@@ -77,9 +77,64 @@ void ShapeFromShadingAnalysis::acquire()
     }
 }
 
+
 void ShapeFromShadingAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
+}
+
+void ShapeFromShadingAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<ShapeFromShadingAnalysis> display_results_callback(*this, &ShapeFromShadingAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
 }
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -323,6 +378,26 @@ void ShapeFromShadingAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -340,6 +415,7 @@ void ShapeFromShadingAnalysis::save_cb(Timer& timer)
     //cout << "ShapeFromShadingAnalysis::saving...\n";
     
     string file_name = ofToString(_save_cnt,2)+"_"+ quad +"_"+ofToString(_run_cnt,2)+".jpg";
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
 
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;
@@ -348,3 +424,11 @@ void ShapeFromShadingAnalysis::save_cb(Timer& timer)
         _RUN_DONE = true;
 
 }
+void ShapeFromShadingAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/ShapeFromShadingAnalysis.h

@@ -21,9 +21,11 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);
     
 protected:
     
@@ -48,6 +50,6 @@ protected:
     int _animation_cnt15;
     int _animation_cnt16;
     int _animation_reset;  // this reset part didn't get working - so using 16 different counters! yay! 
-    float   c, _frame_cnt, _frame_cnt_max;
+    float   c, _frame_cnt, _frame_cnt_max, _results_cnt, _results_cnt_max;
     
 };

src/StrobeAnalysis.cpp

@@ -64,7 +64,61 @@ void StrobeAnalysis::acquire()
 
 void StrobeAnalysis::synthesise()
 {
-    // _saved_filenames has all the file names of all the saved images
+    //incrementer to whichMesh
+    speed=0.2;
+    //whichMesh is the index in the vector of meshes
+    whichMesh=0;
+    
+    int index=0;
+    
+    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
+    bool debug=false;
+    if(debug){
+        _saved_filenames.clear();
+        _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+    }
+    //clear vector so we don't add to it on successive runs
+    meshes.clear();
+    
+    for(int i=0;i<_saved_filenames.size()-1;i++){
+        
+        
+        ofImage image1;
+        ofImage image2;
+        
+        //there is a known issue with using loadImage inside classes in other directories. the fix is to call setUseTExture(false)
+        image1.setUseTexture(false);
+        image2.setUseTexture(false);
+        //some of the textures are not loading correctly so only make mesh if both the images load
+        if(image1.loadImage(_saved_filenames[i]) && image2.loadImage(_saved_filenames[i+1])){
+            meshes.push_back(ofMesh());
+            cout<<"setting mesh"<<endl;
+            int _recorded_brightness_value=getRecordedValueFromFileName(_saved_filenames[i]);
+            setMeshFromPixels( calculateListOfZValues(image1,image2, COMPARE_BRIGHTNESS,_recorded_brightness_value), image2, &meshes[index]);            
+            index++;
+        }
+    }
+    
+}
+
+void StrobeAnalysis::display_results(){
+    
+    Timer* display_results_timer;
+    
+    TimerCallback<StrobeAnalysis> display_results_callback(*this, &StrobeAnalysis::display_results_cb);
+    // display results of the synthesis
+    
+    display_results_timer = new Timer(0, 20); // timing interval for saving files
+    display_results_timer->start(display_results_callback);
+    _RUN_DONE = false;
+    _results_cnt=0;
+    _results_cnt_max=300;
+    
+    while(!_RUN_DONE)
+        Thread::sleep(3);
+    
+    display_results_timer->stop();
+    
 }
 
 // this runs at frame rate = 33 ms for 30 FPS
@@ -132,6 +186,26 @@ void StrobeAnalysis::draw()
         case STATE_DISPLAY_RESULTS:
         {
             // display results of the synthesis
+            int imageWidth=640;
+            int imageHeight =480;
+            ofPushMatrix();
+            ofTranslate(ofGetWidth()/2, ofGetHeight()/2);
+            ofRotateY(_results_cnt*0.3);
+            //ofRotateX(90);
+            //ofRotateZ(whichMesh);
+            ofTranslate(-ofGetWidth()/2, -ofGetHeight()/2),-400;
+            ofTranslate((ofGetWidth()/2)-(imageWidth/2),0,0 );
+            
+            meshes[whichMesh].drawVertices();
+            ofPopMatrix();
+            whichMesh+=speed;
+            cout<<whichMesh<<" size of meshes "<<meshes.size()<<endl;
+            if(whichMesh>meshes.size() -1 || whichMesh<0){
+                speed*=-1;
+                whichMesh+=speed;
+                
+            }
+
             break;
         }
             
@@ -146,6 +220,8 @@ void StrobeAnalysis::draw()
 void StrobeAnalysis::save_cb(Timer& timer)
 {
     string file_name = ofToString(_save_cnt,2)+"_"+ ofToString(_strobe_on) +"_"+ofToString(_run_cnt,2)+".jpg";
+    _saved_filenames.push_back(ofToDataPath("")+_whole_file_path+"/"+file_name);
+
     ofSaveImage(RefractiveIndex::_pixels, _whole_file_path+"/"+file_name, OF_IMAGE_QUALITY_BEST);
     _save_cnt++;
     
@@ -159,3 +235,12 @@ void StrobeAnalysis::save_cb(Timer& timer)
     }
 
 }
+
+void StrobeAnalysis::display_results_cb(Timer& timer){
+    _results_cnt++;
+    if (_results_cnt>_results_cnt_max) {
+        _RUN_DONE=true;
+    }
+}
+
+

src/StrobeAnalysis.h

@@ -21,9 +21,11 @@ public:
     void setup(int camWidth, int camHeight);
     void acquire();
     void synthesise(); 
+    void display_results();
     void draw();
     
     void save_cb(Poco::Timer& timer);
+    void display_results_cb(Poco::Timer& timer);    
     
 protected:
     
@@ -32,6 +34,8 @@ protected:
     int     _save_cnt;
     
     int     _frame_cnt, _frame_cnt_max, _save_cnt_max ;
+    float   _results_cnt, _results_cnt_max;
+    
     int     _strobe_interval;
     bool    _strobe_on;
 };