final check and commit before merge with master

example/RefractiveIndex.cpp

@@ -101,19 +101,19 @@ void RefractiveIndex::setup()
    // _analysisVector.push_back(new ShadowScapesAnalysis(H));
    // _analysisVector.push_back(new ShadowScapesAnalysis(D));
     
-   // _analysisVector.push_back(new RelaxRateAnalysis());
+    _analysisVector.push_back(new RelaxRateAnalysis());
     
-   // _analysisVector.push_back(new IResponseAnalysis());
+    _analysisVector.push_back(new IResponseAnalysis());
     
     _analysisVector.push_back(new ShapeFromShadingAnalysis());
     
    // _analysisVector.push_back(new StrobeAnalysis());
     
-   // _analysisVector.push_back(new CamNoiseAnalysis());
+    _analysisVector.push_back(new CamNoiseAnalysis());
     
-   // _analysisVector.push_back(new ColorSingleAnalysis());
+    _analysisVector.push_back(new ColorSingleAnalysis());
     
-   // _analysisVector.push_back(new ColorMultiAnalysis());
+    _analysisVector.push_back(new ColorMultiAnalysis());
     
     _analysisVector.push_back(new DiffNoiseAnalysis());
         

src/CamNoiseAnalysis.cpp

@@ -65,17 +65,23 @@ void CamNoiseAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
     //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
-    bool debug=false;
+    bool debug=true;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/ColorMultiAnalysis.cpp

@@ -92,16 +92,22 @@ void ColorMultiAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
-    for(int i=0;i<_saved_filenames.size()-2;i+=2){
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
 
         ofImage image1;
         ofImage image2;

src/ColorSingleAnalysis.cpp

@@ -70,16 +70,22 @@ void ColorSingleAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
-    for(int i=1;i<_saved_filenames.size()-2;i+=2){
+    
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         ofImage image1;
         ofImage image2;

src/DiffNoiseAnalysis.cpp

@@ -65,17 +65,22 @@ void DiffNoiseAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/IResponseAnalysis.cpp

@@ -66,17 +66,22 @@ void IResponseAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/RelaxRateAnalysis.cpp

@@ -18,7 +18,7 @@ using Poco::Thread;
 
 void RelaxRateAnalysis::setup(int camWidth, int camHeight)
 {
-    DELTA_T_SAVE = 1300;
+    DELTA_T_SAVE = 130;
     NUM_PHASE = 1;
     NUM_RUN = 1;
     NUM_SAVE_PER_RUN = 100;    
@@ -67,17 +67,22 @@ void RelaxRateAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/ShadowScapesAnalysis.cpp

@@ -95,17 +95,22 @@ void ShadowScapesAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/ShapeFromShadingAnalysis.cpp

@@ -86,17 +86,22 @@ void ShapeFromShadingAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;

src/StrobeAnalysis.cpp

@@ -70,17 +70,22 @@ void StrobeAnalysis::synthesise()
     whichMesh=0;
     
     int index=0;
-    
+    float iterator=1;
-    //if you want to see what this looks like with real data ignore the new filenames and load teh old ones.
     bool debug=false;
     if(debug){
         _saved_filenames.clear();
         _saved_filenames=getListOfImageFilePaths("MIDDLESBOROUGH", _name);
+        
+        //hack to limit number of meshes.
+        if(_saved_filenames.size()>100){
+            iterator= _saved_filenames.size() /100;
+        }
+        
     }
     //clear vector so we don't add to it on successive runs
     meshes.clear();
     
-    for(int i=0;i<_saved_filenames.size()-1;i++){
+    for(float i=0;i<_saved_filenames.size()-1;i+=iterator){
         
         
         ofImage image1;